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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5464204_5466109_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5464204 - 5466109
Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAAACTTCAAAT
Flanking Amino Acid:
SSTCVTAYKQKSAKITPCTL
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
75
0.56
0.9
68.7
36.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
52.2
0.15
1.7
68.98
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003014
5446759 - 5475491
28733