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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5466613_5468484_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5466613 - 5468484
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTCTTTGCATG
Flanking Amino Acid:
STKKTCSSCSKDILNPKDVI
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
56.2
43
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
31.6
-2.1
3.3
38.7
40.8
Minor BPS
43.4
-0.6
1.8
48.39
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002899
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003014
5446759 - 5475491
28733