Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5469256_5472135_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5469256 - 5472135

Intron Length:

2880

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGTAT

U12 Branch Point Sequence:

TTTTCCTTTCCC

Flanking Amino Acid:

KIKDEPDNSEEYGQQPKTQE

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.7

1.12

0.6

91.3

19.2

Major BPS

56.3

0.16

1.5

57.4

49.1

Major PPT

81.4

0.71

0.8

80.3

31.8

Minor 5ss

44.8

-0.6

2.8

61.1

43.8

Minor BPS

49.2

-0

3.6

82.88

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002899

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003014

5446759 - 5475491

28733