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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5499536_5499830_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5499536 - 5499830
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGTTGTGGAACC
Flanking Amino Acid:
HEHQANLLRQDLMRRQEELR
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
72.5
37.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
82.4
0.73
0.9
77.3
37
Minor 5ss
33.1
-1.9
3.2
44.4
43.3
Minor BPS
42.7
-0.5
2.3
56.48
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003643
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003739
5496473 - 5503856
7384