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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5500573_5500651_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5500573 - 5500651
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AGTGCCAGAATA
Flanking Amino Acid:
MGGATTMNMGDPYASAAQKF
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.4
34.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
81.1
0.7
0.7
81
24.2
Minor 5ss
30.2
-2.3
3.7
45.9
49.3
Minor BPS
48.2
-0.1
1.8
60.7
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003643
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003739
5496473 - 5503856
7384