Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5515173_5515720_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5515173 - 5515720

Intron Length:

548

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

TGGCTGTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCGGAG

U12 Branch Point Sequence:

GGCTTCGGAGCT

Flanking Amino Acid:

RLSADVHRHMQAQFVRFAEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

56.6

42.5

Major BPS

-0.1

1.7

51.1

46.3

Major PPT

67.2

0.39

57.7

43.2

Minor 5ss

23.3

-3.1

3.2

25.4

39.4

Minor BPS

41.7

-0.5

2.2

57.88

44.7

Associated Gene:

Gene:

TMEM35B

Ensembl Gene ID:

ENSAPLG00000017324

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047903

5515065 - 5516100

1036