Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_552200_552697_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

552200 - 552697

Intron Length:

498

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAACAGT

5'SS Class:

major

3'SS Sequence:

AATTTGTCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

TTTGTTGTAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

71.2

40.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

78.2

0.63

0.9

74.4

40.5

Minor 5ss

-1.7

3.1

48.8

Minor BPS

58.5

0.35

2.1

82.56

39.6

Associated Gene:

Gene:

PPP1R8

Ensembl Gene ID:

ENSAPLG00000001009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040771

525291 - 552803

27513