Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5537835_5541157_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5537835 - 5541157

Intron Length:

3323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGGGACGT

5'SS Class:

weak_major

3'SS Sequence:

CCTCCTGCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGGCAC

U12 Branch Point Sequence:

GCGCGCCCACGC

Flanking Amino Acid:

FIPPFPVCDSVPQDEWSGYP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.2

0.1

1.1

46.7

43.3

Major BPS

-0.4

1.5

48.8

46.3

Major PPT

69.6

0.44

0.9

60.7

35.2

Minor 5ss

29.8

-2.3

3.5

48.3

47.3

Minor BPS

28.2

-1.6

28.98

35.6

Associated Gene:

Gene:

DLGAP3

Ensembl Gene ID:

ENSAPLG00000003910

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004023

5537778 - 5546085

8308