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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5540338_5541157_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5540338 - 5541157
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAC
U12 Branch Point Sequence:
GCGCGCCCACGC
Flanking Amino Acid:
AKDRAYQYLQVPQDEWSGYP
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
43
-0.4
1.5
48.8
46.3
Major PPT
69.6
0.44
0.9
60.7
35.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
28.2
-1.6
2
28.98
35.6

Associated Gene:

Gene:
DLGAP3
Ensembl Gene ID:
ENSAPLG00000003910
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042799
5539315 - 5546085
6771
ENSAPLT00000030901
5537391 - 5546085
8695
ENSAPLT00000021140
5539315 - 5542558
3244