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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5541364_5542071_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5541364 - 5542071
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGCAAGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGTCTCTCATTA
Flanking Amino Acid:
RSSSADQARSKHYSDSYICN
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
34.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
57.5
0.17
1.1
52.7
41.8
Minor 5ss
33.6
-1.9
3.7
48.1
42
Minor BPS
48.4
-0.1
1.8
61.57
38.6

Associated Gene:

Gene:
DLGAP3
Ensembl Gene ID:
ENSAPLG00000003910
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030901
5537391 - 5546085
8695