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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5768061_5768563_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5768061 - 5768563
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTGTTGGG
5'SS Class:
weak_major
3'SS Sequence:
CATTTATGTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTCCCTTTAATT
Flanking Amino Acid:
GALGKLKRTRKNANSSLPLF
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.8
0.04
1.4
50.9
43.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
54
0.09
1.8
66
44.1
Minor 5ss
18.5
-3.6
3.7
23.4
30.1
Minor BPS
70.3
0.72
1.2
77.88
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001785
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001778
5765149 - 5772937
7789