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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5801044_5816868_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5801044 - 5816868
Intron Length:
15825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGT
5'SS Class:
major
3'SS Sequence:
TGATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTCCTCTTGATT
Flanking Amino Acid:
GLPQQGNLRTRLTGFQLPAP
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
73.8
37.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
83.9
0.76
0.8
81.4
36
Minor 5ss
47.4
-0.3
2.7
67.3
43.8
Minor BPS
68.5
0.66
1.2
79.78
36.5

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464