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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5816982_5846954_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5816982 - 5846954

Intron Length:

29973

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTGGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACACAC

U12 Branch Point Sequence:

CTGTCCCTAACC

Flanking Amino Acid:

SAQGFQANYEVLPSHTCGNP

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.8

81.8

38.5

Major BPS

51.2

0.03

0.9

58.7

27.5

Major PPT

82.3

0.73

0.9

80.2

31.8

Minor 5ss

37.8

-1.4

49.5

46.7

Minor BPS

67.4

0.53

1.7

75.12

41.7

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464