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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5847150_5853475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5847150 - 5853475

Intron Length:

6326

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTCAT

U12 Branch Point Sequence:

AACCTCATAACT

Flanking Amino Acid:

SWDFPLPFCRADDACGGTLR

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

72.8

39.1

Major BPS

73.5

0.58

73.6

32.5

Major PPT

85.2

0.79

0.8

79.9

32.1

Minor 5ss

37.8

-1.4

3.5

55.9

48.3

Minor BPS

55.5

0.25

1.6

69.95

40.4

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464