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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5853684_5896360_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5853684 - 5896360
Intron Length:
42677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TTGGCTGTTATT
Flanking Amino Acid:
EVAGTEGSSLWFTGMNLPAP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.2
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
82.7
0.74
0.9
77.3
37
Minor 5ss
43.5
-0.7
3.1
57.4
41.8
Minor BPS
45
-0.3
2.3
66.64
45

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464