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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5896474_5902973_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5896474 - 5902973
Intron Length:
6500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACT
5'SS Class:
strong_major
3'SS Sequence:
AATCTGTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAT
Flanking Amino Acid:
RQKGFSAQYQVKKQMELKSR
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.8
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.7
0.42
0.9
59.2
42
Minor 5ss
37.7
-1.4
2.9
52.3
44.3
Minor BPS
69
0.67
1.5
84.29
36.6

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464