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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5910775_5911960_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5910775 - 5911960
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
CTAACTTCACCT
Flanking Amino Acid:
ERGKRIGNDFRLGSSIQFTC
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
71.1
0.48
1
65.8
41
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
47.9
-0
1.9
65.55
45

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464