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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5914890_5921356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5914890 - 5921356

Intron Length:

6467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTCTC

5'SS Class:

strong_major

3'SS Sequence:

CCGTCTTTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAC

U12 Branch Point Sequence:

TTCGTATTAACA

Flanking Amino Acid:

WVITALNPAKVIKLTFEEFE

Intron Amino Acid Position:

435

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

76.2

39.9

Major BPS

81.9

0.79

0.8

81.9

Major PPT

70.6

0.46

64.4

41.4

Minor 5ss

37.4

-1.4

3.3

52.4

44.8

Minor BPS

60.9

0.34

1.7

71.68

40.7

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464