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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5934601_5945243_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5934601 - 5945243

Intron Length:

10643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTCAG

5'SS Class:

major

3'SS Sequence:

TTTCTCGTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTGAT

U12 Branch Point Sequence:

TGCTGCATGATT

Flanking Amino Acid:

QWSAQKPVCVFSCFFNFTTP

Intron Amino Acid Position:

568

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

63.6

42.3

Major BPS

70.8

0.52

1.2

63.4

44.3

Major PPT

85.8

0.81

0.8

80.7

31.3

Minor 5ss

36.1

-1.6

47.2

42.5

Minor BPS

48.1

-0

2.1

68.54

42.7

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464