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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5951675_5952095_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5951675 - 5952095
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTGTTTGTCACA
Flanking Amino Acid:
SDIGFQIRYETVKLQSDHCL
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
80.5
0.69
0.9
75.8
38.1
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
46.9
-0.2
2.3
65.7
41.8

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464