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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5952563_5957992_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5952563 - 5957992

Intron Length:

5430

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGCCAT

U12 Branch Point Sequence:

GCTGGCTGAAGC

Flanking Amino Acid:

TWTIETSHGKGVFFTFHTFH

Intron Amino Acid Position:

953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.6

33.8

Major BPS

48.2

-0.1

1.3

56.2

40.7

Major PPT

79.5

0.66

0.7

73.3

Minor 5ss

29.7

-2.3

40.4

45.3

Minor BPS

-0.5

2.2

51.35

45.6

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464