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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5958209_5960580_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5958209 - 5960580

Intron Length:

2372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAACA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGCCAT

U12 Branch Point Sequence:

CATGCCATACGT

Flanking Amino Acid:

SYEGFNITFSEYDLEPCDEP

Intron Amino Acid Position:

1025

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.8

83.4

27.8

Major BPS

53.4

0.08

1.4

64.2

Major PPT

80.2

0.68

0.8

73.5

31.4

Minor 5ss

33.8

-1.9

2.9

41.4

44.7

Minor BPS

43.6

-0.4

2.2

61.46

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464