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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5964811_5966679_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5964811 - 5966679

Intron Length:

1869

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTCTT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

TTTTCCAGTATG

Flanking Amino Acid:

FELEAGDVLKVYDGSNSSAR

Intron Amino Acid Position:

1145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.7

34.8

Major BPS

0.3

62.3

30.4

Major PPT

81.3

0.7

0.8

73.6

36.9

Minor 5ss

40.2

-1.1

3.1

59.2

45.2

Minor BPS

48.5

-0.2

2.1

65.45

42.1

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464