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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5966837_5967228_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5966837 - 5967228
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TCTCTCGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATATGAGGAAAG
Flanking Amino Acid:
TSKGFELQFSSFELIKCEDP
Intron Amino Acid Position:
1197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.3
37.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
78.2
0.63
0.8
69.3
36.9
Minor 5ss
42
-0.9
3.1
61
38.4
Minor BPS
34.6
-1.3
2.4
42.32
41.8

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464