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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5967421_5968725_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5967421 - 5968725
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATATGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTAACC
Flanking Amino Acid:
AWDQPLPTCVAECGGTIKGE
Intron Amino Acid Position:
1261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
80.7
0.69
0.9
77.6
40.8
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
61
0.33
2
76.74
39.2

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464