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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5973568_5976106_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5973568 - 5976106

Intron Length:

2539

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TAATGCTCTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATTTTTTTAATG

Flanking Amino Acid:

SKQGFAVQFSVSTATSCNDP

Intron Amino Acid Position:

1371

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

78.8

38.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.6

0.55

0.9

70.5

40.6

Minor 5ss

48.4

-0.1

3.2

72.7

44.5

Minor BPS

73.5

0.6

1.2

72.81

34.2

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464