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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5979639_5986150_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5979639 - 5986150
Intron Length:
6512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATCTTACAG
Flanking Amino Acid:
SNTGFVIDYTENPRESCFDP
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.5
0.82
0.8
80.4
31.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
49
-0.2
1.8
56.61
44.8

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464