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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5986346_5987328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5986346 - 5987328

Intron Length:

983

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCC

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTGAT

U12 Branch Point Sequence:

CTCTTCTCGACT

Flanking Amino Acid:

TWNKPRPTCTAPCGGQYTGS

Intron Amino Acid Position:

1609

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

71.3

37.2

Major BPS

61.1

0.28

1.2

52.7

43.2

Major PPT

89.5

0.89

0.6

84.5

23.2

Minor 5ss

-2.1

3.3

42.6

44.4

Minor BPS

0.4

1.6

74.58

42.7

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464