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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5987446_5989702_F

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5987446 - 5989702
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATATTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTCTCTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCCACCCTGACG
Flanking Amino Acid:
LYFIVVPKDYVVFGQFAFFQ
Intron Amino Acid Position:
1648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
74.2
36.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
84.5
0.78
0.7
80
25.3
Minor 5ss
57.3
0.25
2.5
75.5
40.6
Minor BPS
47
-0.3
1.8
47.83
45.6

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464