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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5989817_5989924_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5989817 - 5989924

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGAC

5'SS Class:

strong_major

3'SS Sequence:

AAGCCTTAGAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCAAAA

U12 Branch Point Sequence:

CAGTGCAAAACA

Flanking Amino Acid:

LLSSLSGSHTGFSKPLILIK

Intron Amino Acid Position:

1686

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.5

32.8

Major BPS

52.9

0.07

1.1

59.3

35.9

Major PPT

43.6

-0.3

1.7

42.8

41.6

Minor 5ss

29.5

-2.3

3.5

40.1

46.3

Minor BPS

42.8

-0.5

2.2

52.94

45.1

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464