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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5990090_5992507_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5990090 - 5992507

Intron Length:

2418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCCCGCAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAA

U12 Branch Point Sequence:

GCACCCTCATCT

Flanking Amino Acid:

TAKGFHFVYQAVPRTSATQC

Intron Amino Acid Position:

1713

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.7

86.9

30.1

Major BPS

68.1

0.45

1.3

78.7

34.9

Major PPT

64.8

0.33

1.1

36.7

Minor 5ss

33.9

-1.8

2.8

41.5

45.1

Minor BPS

48.6

-0

1.8

63.81

45.6

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464