Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_5992712_5993351_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5992712 - 5993351

Intron Length:

640

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTGAC

5'SS Class:

major

3'SS Sequence:

TTACTTATTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

GTTTCTTTACTT

Flanking Amino Acid:

QWNVSVPTCVVPCGGNLTER

Intron Amino Acid Position:

1781

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

66.7

39.6

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

82.1

0.72

0.9

74.2

Minor 5ss

31.1

-2.2

3.4

34.1

42.2

Minor BPS

0.71

1.6

84.22

37.1

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464