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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5993477_5996699_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5993477 - 5996699

Intron Length:

3223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGCGT

5'SS Class:

major

3'SS Sequence:

GTTATCACTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAC

U12 Branch Point Sequence:

TTTCTGTTATCA

Flanking Amino Acid:

ITVPEGAGIQIQVISFVTEQ

Intron Amino Acid Position:

1823

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

1.1

64.5

46.9

Major BPS

78.3

0.7

32.1

Major PPT

75.6

0.58

0.9

71.3

39.4

Minor 5ss

31.4

-2.1

3.6

47.8

47.7

Minor BPS

50.5

0.01

2.3

72.17

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464