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Intron Name: Anas_platyrhynchos_platyrhynchos_24_5996797_5997987_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5996797 - 5997987

Intron Length:

1191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAG

U12 Branch Point Sequence:

ATCCTCTTCAGT

Flanking Amino Acid:

NTATMLGSFSGTTVPALLNS

Intron Amino Acid Position:

1855

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

77.9

36.8

Major BPS

63.4

0.33

1.6

73.6

41.8

Major PPT

83.5

0.75

0.8

76.2

37.8

Minor 5ss

37.4

-1.4

3.6

54.1

45.6

Minor BPS

47.9

-0

66.82

44.1

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044002

5996778 - 6014543

17766

ENSAPLT00000004734

5800241 - 6058704

258464