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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6001847_6001940_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6001847 - 6001940

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGAGG

5'SS Class:

major

3'SS Sequence:

TTCTCTCCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCAAAC

U12 Branch Point Sequence:

GACCCCCAAACT

Flanking Amino Acid:

FQCEPGYALQGHSHISCMPG

Intron Amino Acid Position:

1930

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.1

57.3

Major BPS

-0.1

50.5

30.4

Major PPT

82.6

0.73

0.7

81.1

24.1

Minor 5ss

30.7

-2.2

3.3

40.3

45.4

Minor BPS

47.4

-0.1

64.45

45.1

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044002

5996778 - 6014543

17766

ENSAPLT00000004734

5800241 - 6058704

258464