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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6002011_6004720_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6002011 - 6004720

Intron Length:

2710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAGGACTC

5'SS Class:

major

3'SS Sequence:

GTTGGTTTTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAC

U12 Branch Point Sequence:

TGACCATTAACA

Flanking Amino Acid:

RWNYPPPLCIAQCGGTAEEM

Intron Amino Acid Position:

1953

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

1.1

61.1

43.9

Major BPS

69.5

0.49

71.3

30.3

Major PPT

79.5

0.66

72.2

42.7

Minor 5ss

35.6

-1.6

3.5

51.7

45.1

Minor BPS

64.8

0.46

1.6

72.6

38.2

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464

ENSAPLT00000044002

5996778 - 6014543

17766