Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6004838_6005707_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6004838 - 6005707

Intron Length:

870

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGACAG

5'SS Class:

major

3'SS Sequence:

TCTTCCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

AAACTGTTGATT

Flanking Amino Acid:

TWRILLPVGFGAHIQFLNFS

Intron Amino Acid Position:

1992

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

60.4

40.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

80.9

0.7

73.2

31.7

Minor 5ss

-2.8

2.9

27.2

37.4

Minor BPS

45.8

-0.2

59.64

37.7

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044002

5996778 - 6014543

17766

ENSAPLT00000004734

5800241 - 6058704

258464