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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6005918_6007509_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6005918 - 6007509

Intron Length:

1592

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGAGG

5'SS Class:

major

3'SS Sequence:

TTTTTTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

TCCACTTTATTT

Flanking Amino Acid:

NKPGFKLEYQAYELQECPDP

Intron Amino Acid Position:

2062

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

1.1

64.3

47.1

Major BPS

75.1

0.62

65.6

Major PPT

95.5

1.02

0.5

88.9

28.1

Minor 5ss

30.3

-2.3

3.3

39.2

46.3

Minor BPS

54.4

0.22

1.6

67.7

44.1

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044002

5996778 - 6014543

17766

ENSAPLT00000004734

5800241 - 6058704

258464