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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6007699_6010525_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6007699 - 6010525

Intron Length:

2827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCTT

5'SS Class:

strong_major

3'SS Sequence:

TGATTACCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TATTTGTTAATT

Flanking Amino Acid:

NWDHPLPRCEVPCGGNVTTQ

Intron Amino Acid Position:

2125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

75.1

40.7

Major BPS

84.4

0.85

34.5

Major PPT

74.3

0.55

0.9

67.3

39.1

Minor 5ss

42.8

-0.8

3.4

64.4

Minor BPS

65.9

0.58

84.43

36.6

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044002

5996778 - 6014543

17766

ENSAPLT00000004734

5800241 - 6058704

258464