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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6011333_6015110_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6011333 - 6015110

Intron Length:

3778

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTCAGTATT

5'SS Class:

major

3'SS Sequence:

TGCTGTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTTAC

U12 Branch Point Sequence:

CCCAGCTTAATT

Flanking Amino Acid:

NGGIFAIYFYAYQLFRCQPP

Intron Amino Acid Position:

2233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

1.3

82.1

37.7

Major BPS

0.5

0.9

61.4

35.9

Major PPT

80.3

0.68

0.9

76.9

37.4

Minor 5ss

37.6

-1.4

2.9

53.2

43.3

Minor BPS

51.3

0.12

1.9

63.64

47.2

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464