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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6015192_6016128_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6015192 - 6016128

Intron Length:

937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGCCTCC

5'SS Class:

weak_major

3'SS Sequence:

TTTCTGTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCAAGAT

U12 Branch Point Sequence:

GCTCGGTCAAGA

Flanking Amino Acid:

VITENEEFNIGDIVRYRCLP

Intron Amino Acid Position:

2260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.6

0.37

1.3

57.6

42.8

Major BPS

54.8

0.12

1.2

51.3

42.7

Major PPT

0.83

0.7

84.9

29.9

Minor 5ss

49.3

-0

2.8

68.6

42.5

Minor BPS

35.9

-1

2.5

45.34

43.6

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464