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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6018220_6018753_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6018220 - 6018753

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCCTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTGACTTTTATT

Flanking Amino Acid:

KQYDEFEIFDGPSGQSPLLL

Intron Amino Acid Position:

2361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.9

31.6

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

85.1

0.79

0.7

25.5

Minor 5ss

32.2

-2

3.5

44.1

44.7

Minor BPS

59.6

0.38

1.7

76.16

40.9

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464