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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6020058_6025081_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6020058 - 6025081

Intron Length:

5024

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCTTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

GATTTCTCAGCT

Flanking Amino Acid:

HWNEAIPLCQALSCGVPRAP

Intron Amino Acid Position:

2473

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.8

73.9

29.7

Major BPS

0.52

1.5

79.6

35.6

Major PPT

79.8

0.67

0.7

72.1

32.4

Minor 5ss

25.3

-2.8

3.1

30.4

42.9

Minor BPS

55.8

0.26

1.8

74.34

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464