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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6025268_6025568_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6025268 - 6025568

Intron Length:

301

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGCTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCACAT

U12 Branch Point Sequence:

TCTCCCCTGACT

Flanking Amino Acid:

SNGNQPPQCVAVTCPDINSI

Intron Amino Acid Position:

2535

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.2

39.5

Major BPS

56.3

0.16

62.9

34.3

Major PPT

76.6

0.6

0.9

73.8

36.9

Minor 5ss

28.5

-2.5

3.1

31.8

42.6

Minor BPS

64.8

0.55

1.7

81.96

39.3

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464