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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6027422_6027732_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6027422 - 6027732

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGGTAGTG

5'SS Class:

weak_major

3'SS Sequence:

AGGGGCAGGCGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTGAT

U12 Branch Point Sequence:

TGTGTGATGACT

Flanking Amino Acid:

KCLGTCRASVIALSDSPCLP

Intron Amino Acid Position:

2665

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.6

0.11

1.1

51.7

39.4

Major BPS

63.5

0.34

1.4

57.1

49.4

Major PPT

37.2

-0.7

1.6

21.2

36.5

Minor 5ss

29.7

-2.3

3.7

41.9

45.2

Minor BPS

44.5

-0.3

2.3

68.13

42.9

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464