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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6031414_6032243_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6031414 - 6032243
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTTTTGTATTT
Flanking Amino Acid:
QWSSSLPACRVINCTDPGHL
Intron Amino Acid Position:
2793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
47.8
-0
2.2
71.36
40.7

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464