About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6035371_6037793_F

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6035371 - 6037793
Intron Length:
2423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CTCTTCTTAACA
Flanking Amino Acid:
RWSGSLPHCSGGSQGVCGDP
Intron Amino Acid Position:
2914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
80.2
0.68
0.8
76.5
30.7
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
77.8
0.87
1.2
78.35
38.8

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464