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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6037977_6043285_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6037977 - 6043285
Intron Length:
5309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCTG
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GCTTTTTTAACC
Flanking Amino Acid:
SWSGTQPECEVISCGNPGTP
Intron Amino Acid Position:
2975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
65.7
45.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.9
0.78
0.8
77.7
36.7
Minor 5ss
36.8
-1.5
3.2
50.2
46
Minor BPS
73.6
0.72
1.2
74.15
36.9

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464