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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6044439_6045652_F

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6044439 - 6045652
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
TWNGSKPTCKAIICKSPQDI
Intron Amino Acid Position:
3094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.2
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.9
82
34.8
Minor 5ss
33.6
-1.9
3.5
39
46.2
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
CSMD2
Ensembl Gene ID:
ENSAPLG00000004505
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004734
5800241 - 6058704
258464