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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6050175_6051418_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6050175 - 6051418

Intron Length:

1244

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGTCA

5'SS Class:

strong_major

3'SS Sequence:

CCTATTGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TCCTATTGAAAC

Flanking Amino Acid:

GMQNNSQGYQVGSIIFFKCQ

Intron Amino Acid Position:

3235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

69.5

37.7

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

62.7

0.29

1.1

57.9

41.2

Minor 5ss

35.9

-1.6

3.4

47.9

47.7

Minor BPS

-0.1

1.7

57.17

41.4

Associated Gene:

Gene:

CSMD2

Ensembl Gene ID:

ENSAPLG00000004505

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004734

5800241 - 6058704

258464